PySB documentation

• Introduction to modeling
  • PySB as modeling tool
  • A quick example
• Getting Started
  • Python Knowledge
  • Requirements
  • Recommended
  • The easiest way to use PySB
  • Instructions for Linux installations
  • Instructions for OS X installations
  • Instructions for Windows installations
• Tutorial
  • Modeling with PySB
  • The Empty Model
  • Monomers
  • Parameters
  • Rules
  • Initial conditions
  • Observables
  • Simulation and analysis
  • Visualization
• Advanced modeling
  • Higher-order rules
  • Using provided macros
  • Compartments
  • Model calibration
  • Modules
• About Rules
  • Overview
  • Reference to Rules-based languages
• PySB Modules Reference
  • PySB core
  • BioNetGen integration
  • Macros
• About
  • About PySB
  • About the Developers

Indices and tables

• Index
• Module Index
• Search Page